BtaALTA0007627-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112489745-112491131:+
Coord C1 exon
chr8:112489745-112489950
Coord A exon
chr8:112490991-112490996
Coord C2 exon
chr8:112490997-112491131
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TTCTCCTCCTCCCTTGCTAGGAG
3' ss Score
10.01
Exon sequences
Seq C1 exon
AACAACAGCTCTCAGAACGGGAGCAGCAGTTGTTGGAAAAGTCAGCTGAGCTGCTGGCTCTTCAGAAAGAGGCGGACTCGATGAGGGCAGACTTCAGCCTCTTGCGAAACCAGTTCTTGACGGAGAGGAAGAAAGCTGAGAAGCAGGTAGCCAGCCTCAGGGAAGCGCTCAAGACCCAGCGCAGCCAGCTGGAGAAGACCCTTCTC
Seq A exon
GAGCAG
Seq C2 exon
AAGCAGGAGAACAGCTCCATGCAGAAGGAGATGGCGACTATCGAGCAGGTGGCGCAGGACAACCACGAGCGGGCCCGGCGCCTGATGCGGGAGCTCAGCCAGATGCAGCAGGAGTACGCGGAGCTCAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-51-63,51-62-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=0.851
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGAAGCGCTCAAGAC
R:
GCTCGATAGTCGCCATCTCCT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development