BtaALTA0007937-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000808 | COX14
Description
Bos taurus COX14 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX14), mRNA. [Source:RefSeq mRNA;Acc:NM_001195064]
Coordinates
chr5:29955724-29956382:-
Coord C1 exon
chr5:29956327-29956382
Coord A exon
NA
Coord C2 exon
chr5:29955724-29955818
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
TCTTCTACTTTGTCTAACAGAAT
3' ss Score
9.17
Exon sequences
Seq C1 exon
CTGAGGTCGCGCAGGCTGGAGGCCTCGGTCGGACGGCAGGGAGCAGCAGCATCCAG
Seq A exon
NA
Seq C2 exon
AATTTGGGATGCACAGCTTATCCGCATCAAACCATAAACTCCTTTGGGACAGAAGCCACCTTCTCTGCAGCCTTCATACATAGCCCGAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000808-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAGCAGCAGCATC
R:
CACTCGGGCTATGTATGAAGGC
Band lengths:
112-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development