BtaALTA0007973-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6090422-6091272:+
Coord C1 exon
chr7:6090422-6090631
Coord A exon
chr7:6091155-6091159
Coord C2 exon
chr7:6091160-6091272
Length
5 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GACTCAGTCCTTCCTTCCAGAGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GCTGGTCCCCTGAAGAGCGAGGTCCCGTGGCCGTTCCGGAGGAGGGGGTGACAGTCACGCGCTGTGGCTGCGCCCGCGCCTGCAGCATCAGCGGGGAGCCGGTGTGTGGCTCCGACGGCGTTGTCTACGCCAGCGCCTGCCATCTGCAGGAGGCCGCCTGCCGCCGCCGCGTGAGATTGGAGCCCGCGCCCCCTGGCCGCTGCGCGCTTG
Seq A exon
AGCAG
Seq C2 exon
CCGACACCAGCCTTGGCCTTGTACAGCTACGAGTATGACTTGGGTCCCCTGGACACCGGGCACCTGGCAGCTGGCCATGAGTTGGTGGACTTGGATAAGGAAGCAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331-44-44,44-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=57.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGCGTGAGATTGGAG
R:
GGACCCAAGTCATACTCGTAGC
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development