BtaALTA0008605-3/5 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000046805 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr18:50347737-50348830:-
Coord C1 exon
chr18:50348689-50348830
Coord A exon
chr18:50347914-50347924
Coord C2 exon
chr18:50347737-50347913
Length
11 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
CTCCCCTCCCCCCACCCCAGTTC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAAAAGCAGGACCCGCTGAGCCACTTCTTCATGGATACTCTGCTGATGACCACACACAATCTGCTCTTCGGCGGCACTGAGACCGTGGGTACCACGCTGCGCCACGCCTTCCGACTGCTCATGAAGTATCCAGAAGTGCAAG
Seq A exon
TTCGAGTCCAG
Seq C2 exon
GAGGAAATCGACCGCGTGGTGGGACACGAGCGGCTGCCGACGGTGGAGGACCGAGCGGCGATGCCTTACACAGACGCGGTGATCCACGAAGTGCAGCGCTTCGCAGACGTCATCCCCATGAGCTTACCGCACCGTGTCACTCGGGACACGAACTTTCGAGGCTTCACGATACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046805-4-8,4-7,4-6,4-5,4-4-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAATCTGCTCTTCGGCG
R:
CCACGCGGTCGATTTCCTC
Band lengths:
108-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development