BtaALTA0008746-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25060982-25062595:-
Coord C1 exon
chr2:25062506-25062595
Coord A exon
chr2:25061087-25061109
Coord C2 exon
chr2:25060982-25061086
Length
23 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCCTTCTGGTCTTTTCTCAGGTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GCAGGCATTCAACAGCCTGTTTTGCTGTATCTTGCAGTGTTCCATGTGCTACCTTTTTCACTCATAGGGATTCTGGAGATCAACAAAAAG
Seq A exon
GTGATGTCTACCTTTCCCCTCAG
Seq C2 exon
ATTTTTGGGAACGTCACGGATGCCACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCGGGACTGGTCAGACTTTATAGCTTCCAAGCCATCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-12-11,12-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCATTCAACAGCCTGTT
R:
GCATCCGTGACGTTCCCAAAA
Band lengths:
113-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development