BtaALTA0009137-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102103552-102104240:-
Coord C1 exon
chr4:102104166-102104240
Coord A exon
NA
Coord C2 exon
chr4:102103552-102103647
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTGCTTTCTTTCTTTAGCAGGAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCATCCAATCGGAAAAAGAAGAGAACAAGCTTTAAAAGGAAAGCCAGCAAAAGAGGAACCGAA
Seq A exon
NA
Seq C2 exon
GAAAACAAAGGTCGTCCTTTTGTGATAAAACCTATCTCTTCTCCGCTCATGAAACCTTTGCTTGTGTTCGTGAACCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-15-15,15-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAAAAGAGGAACCGAA
R:
CCACTCTTGGGGTTCACGAAC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development