BtaALTA0009150-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77238175-77238614:+
Coord C1 exon
chr15:77238175-77238270
Coord A exon
chr15:77238537-77238539
Coord C2 exon
chr15:77238540-77238614
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGACCTTCTGTTTCCCGCAGCAG
3' ss Score
8.32
Exon sequences
Seq C1 exon
GAGTCAGCGACGTATGGGGAACACATCTGGTTTGAGACCAACGTGTCCGGGGACTTCTGCTACGTCGGAGAGCAGTACTGCGTCGCCAAGATGCTG
Seq A exon
CAG
Seq C2 exon
AAATCAGTGTCCCGGAGAAAGTGTGCAGCCTGCAAGATTGTGGTCCACACACCCTGCATTGAGCAGCTCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-12-6,12-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCTGCTACGTCGGAGA
R:
TGTGGACCACAATCTTGCAGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development