BtaALTA0009305-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147891043-147894698:+
Coord C1 exon
chr1:147891043-147891270
Coord A exon
NA
Coord C2 exon
chr1:147894564-147894698
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
GGTTTGTGTTTCAAAAGCAGATC
3' ss Score
4
Exon sequences
Seq C1 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACAGCGCCCCGGGCAACTGGCCTCCGCTCCGCTGCAGAGCCGCCCCAGCATCGAGCCCTGGCCTGACCCGGCCATTCAGGGCTCGTCCACCTCATCCTCCGCATCCTCCACCTCATCTCACCCGGGAGGGCAGCCTGCCGCCACGCCCAGTGCTGCCGCCGCGCTTGCCGGCCCCGCGGCCCTCGCCCGCGTAG
Seq A exon
NA
Seq C2 exon
ATCTGCACTCTGCCCCTCCTGATGTCACCACGGGCCTCGTGCAGCATCAGCACGCATACTGTGAGCGTCCGAAGCTGGCCTCCGTGAGAGGAGTCCCTCGGGGGTGCCGTGGGAGTGTCCTAGAGACGGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-4-7,4-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCATCTCACCCGGGAG
R:
TCAGGAGGGGCAGAGTGC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development