BtaALTA0009484-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31007684-31009899:+
Coord C1 exon
chr19:31007684-31007810
Coord A exon
NA
Coord C2 exon
chr19:31009644-31009899
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATGTCGACTCTTTCCTCCAGCTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTATGAAACAAGACTTTATGGGGACTGGTGTCAAACAGTAGCAGAGAAGTCCCAGTACAACCTTTCACGGCCACTTCTGAGACGTGACCCGGAGACAAAGCAGATCACTGTCAACTTTAGTCCACAG
Seq A exon
NA
Seq C2 exon
CTGGTCTCCGTGCTGAAAGAAATGAGTTATCTTCAACCCCAGCAAATGACGCACATCCCCGAGACAGCAGCAGCCATGTTCTCCTCCAGAGAGTTCTACCGGCAGCTCGTGGCTAATTTGGAGTTGACGGCAACTTGGTACAACAAGGTTATGAAAACTCTGCTCGAGGTGGAATTTCCATTAGTTCAGGAAGAGCTGCAAGATATCGATCTTTGCCTGAGAGTTGCAGAGGAGACTCTGAACTGGAAGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-13-16,13-15,13-14-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTTCACGGCCACTTCTG
R:
TGGAAATTCCACCTCGAGCAG
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development