BtaALTA0009822-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141724925-141727058:-
Coord C1 exon
chr1:141726941-141727058
Coord A exon
NA
Coord C2 exon
chr1:141724925-141725088
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TTTTTCTTCCTGTGAGGTAGTAA
3' ss Score
-0.32
Exon sequences
Seq C1 exon
CTCCCGCACGAATCCTGACCTTCAGTGGCACGGTGACTACTCCCTGGATGAAAGACATTGCCTTGCCTTGTAAAGCTGTTGGGGACCCCTCTCCTGCCGTAAAGTGGATGAAAGACAG
Seq A exon
NA
Seq C2 exon
TAACGGGACGCCCAGCCTGGTGACGATTGATGGGCGGAGAAGCGTCTTCAGCAACGGCAGCTTTGTCATCCGCACTGTGAAGGCAGAGGACTCTGGCTATTACAGCTGCATCGCCAATAACAACTGGGGGTCGGATGAAATTATCTTAAATTTACAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-20-23,20-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.0=90.0)
A:
NA
C2:
PF0767911=I-set=PD(58.9=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGTAAAGCTGTTGGGG
R:
CTTCTCCGCCCATCAATCGTC
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development