BtaALTA0010967-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17832596-17847338:+
Coord C1 exon
chr7:17832596-17832758
Coord A exon
NA
Coord C2 exon
chr7:17847159-17847338
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CATCTCTGGTCCCCAGACAGTTC
3' ss Score
2.97
Exon sequences
Seq C1 exon
AGCGGGTGAAATGGCAGCGGCGGAGCCGGCGGCGACCGCGGTCCCGGGGGGCGGCTGAGGGGGCCGGGCCGGGCCGGGGCTGCGGGGCGAGCGACACGGCGGGGATCCGGCGGCGCGGCCCGGGACGGCGACACTCGGCATGGCGATGGCGCGCTCTTTACAG
Seq A exon
NA
Seq C2 exon
TTCTGTGACCTGACCCTGCTCACAGCGGAGGAGCCTGACCGCCATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAGGAGGCCCTGTCAGCCCCCACCTGCTCCCCCACCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTTGAAGAGCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCGCGCTCTTTACAG
R:
GATGAGGAGTCGGGGCTCAG
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development