BtaALTA0011250-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60196949-60197274:-
Coord C1 exon
chr8:60197223-60197274
Coord A exon
chr8:60197101-60197146
Coord C2 exon
chr8:60196949-60197100
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGAGTGTGCCCACCCCCCAGGCT
3' ss Score
6.27
Exon sequences
Seq C1 exon
GCTTCCCCCTATTCCATGGATGACAGAGACCCTCGCAAGTTCTTCATGTCAG
Seq A exon
GCTTCACTGGTTATGTGCCCCGTGCTCGCTTCCTCTTCGGCTCCAG
Seq C2 exon
CTTTCCTGTGCTCAGCAACCAGGCGCTGCAGGAATTTGGAGAGATGAAGTCACCGGGCAGGTCCCAGAAGGATCCTAAGCATCTCCCTGCACTGTCCCGGACCTACCCTCAGCACCTGGGCCTTTTACCTAAATACGGGGGCTATGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(8.8=27.8)
A:
NA
C2:
PF106294=DUF2475=PD(89.5=76.1),PF106294=DUF2475=PU(34.2=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGGATGACAGAGACCCT
R:
AGTGCAGGGAGATGCTTAGGA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development