BtaALTA0012670-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012772 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr11:103049230-103050445:+
Coord C1 exon
chr11:103049230-103049367
Coord A exon
chr11:103050187-103050279
Coord C2 exon
chr11:103050280-103050445
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CGGAGTGTCCTGTTCCTCAGGGG
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTGTTCTCCACCCCCCATGGGCTGGAAGTGCACGCCCGCCGCTCCCACAGCGGGACCCGGCCCTTCGCCTGCAACGTCTGCGGGAAAACCTTCGGCCACTCCGTGAGCCTGGAACAGCACACACACGTCCACTCCCAG
Seq A exon
GGGATCCCGGCCGGGTCCAGTCCTGCGCCCAGCTTGGCAGCCCCGGGCCGCGAGGCCCCACCTGACCCCCCGGGGCCTCGTTTCCTCCGGCAG
Seq C2 exon
GAGCGCAGCTTCGAGTGCCGGATGTGCGGCAAGGCCTTCAAGCGCTCGTCCACCCTGTCCACACACCTGCTCATCCACTCGGACACGCGGCCCTACCCCTGCCAGTTCTGCGGCAAGCGCTTCCACCAGAAGTCTGACATGAAGAAGCACACCTATATCCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012772-6-9,6-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=58.7)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTCTGCGGGAAAACCTTC
R:
CAGAACTGGCAGGGGTAGGG
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development