BtaALTA0013121-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18972979-18973267:-
Coord C1 exon
chr7:18973143-18973267
Coord A exon
chr7:18973041-18973043
Coord C2 exon
chr7:18972979-18973040
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TCTCACCTGTGTTTCACCAGCAG
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGTCCAGGTACGAAAGTATGGGGAGCAGAAAAAGCTATTCATCTCTGCTGGGCTCCTCCCGGAATCACCCTCCAAACCAGGGCTCCCGAAGTCAGAGCACATGGTCACCCCCAAGGTGGACCACG
Seq A exon
CAG
Seq C2 exon
GGACCACTGCTGCACCTGACAAGGCCAAGTCAAAACCCACAGGGTTACAAGGGGACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291-11-10,11-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAATCACCCTCCAAACCAG
R:
CTGTGGGTTTTGACTTGGCCT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development