BtaALTA0013440-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021373 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr11:103094982-103095352:+
Coord C1 exon
chr11:103094982-103095062
Coord A exon
NA
Coord C2 exon
chr11:103095255-103095352
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
CTGCCGTGGTCCCCTCGCAGCCA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTTACGCCCCCAGCGACATGCCCGTCAAGGCCAAGCGCAGCACCTACAACTACAGCCTCCCCATCACCGTCAAAAAGACCA
Seq A exon
NA
Seq C2 exon
CCAGCCAGCTCGTCACCATGCGTGACCTGAAGCAAGGCCTGGGCCCCTCGGGGTCGGCCTCTGCACAGAAGTCGAGTCCCAACAAGTACAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021373-9-14,9-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCATCACCGTCAAAAA
R:
GTTGGGACTCGACTTCTGTGC
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development