BtaALTA0013582-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015784 | HAPLN2
Description
Bos taurus hyaluronan and proteoglycan link protein 2 (HAPLN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075684]
Coordinates
chr3:14259032-14259736:-
Coord C1 exon
chr3:14259643-14259736
Coord A exon
NA
Coord C2 exon
chr3:14259032-14259090
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGAAACTCTTTCTCCAGCAGGAC
3' ss Score
5.31
Exon sequences
Seq C1 exon
GTTTCTTGAAGCAAGTGGAGGTCCTGGAAGTCTGGTTCCCACCTTGACAGCCTCTTCCCATAGGCAATGCGCACCCAGGCGCCGGAGGGCAGAG
Seq A exon
NA
Seq C2 exon
GACCAAAAGCTGCCAATCACTGCACCTGCCATCTCTGTGAAGAGGCCCACTTCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015784-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTCTGGTTCCCACCTT
R:
AGATGGCAGGTGCAGTGATTG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development