BtaALTA0013590-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010118 | HAT1
Description
Bos taurus histone acetyltransferase 1 (HAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034347]
Coordinates
chr2:24644363-24646776:-
Coord C1 exon
chr2:24646752-24646776
Coord A exon
chr2:24644468-24644520
Coord C2 exon
chr2:24644363-24644467
Length
53 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGTT
3' ss Score
13.68
Exon sequences
Seq C1 exon
GGTGCTCGCAGCTCGGAAATGGCGG
Seq A exon
GTTTGATTAATTAAATCACTTCCAACTAGTCTTTTTAAAATCCTGTTTCTTAG
Seq C2 exon
GATTTGGTGCTATGGAGAAGTTTTTGGTTGAATACAAGAGTGCAGTTGAGAAGAAACTGGCTGAGTACAAATGTAACACCAACACAGCAATTGAACTGAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010118-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF103944=Hat1_N=PU(7.4=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCGCAGCTCGGAAAT
R:
TTCAGTTCAATTGCTGTGTTGGTG
Band lengths:
124-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development