BtaALTA0014063-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021580 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:19702517-19702781:-
Coord C1 exon
chr2:19702686-19702781
Coord A exon
chr2:19702553-19702594
Coord C2 exon
chr2:19702517-19702552
Length
42 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CACACCTTTTTTTTAAGGAGGCT
3' ss Score
-9.78
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
Seq A exon
GCTATGGTGGTGGAGGTGGTGGCAGCAGAGGGAGCTATGGAG
Seq C2 exon
GAGGCGATGGTGGATATAATGGATTTGGAGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021580-6-11,6-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGGAGGTGGATCTGGC
R:
CATCCCCTCCAAATCCATTATATCCA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development