BtaALTA0014305-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013162 | HSPA8
Description
Bos taurus heat shock 70kDa protein 8 (HSPA8), mRNA. [Source:RefSeq mRNA;Acc:NM_174345]
Coordinates
chr15:34219708-34220705:-
Coord C1 exon
chr15:34220636-34220705
Coord A exon
NA
Coord C2 exon
chr15:34219708-34219846
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTGTGTGGGTGTCTTCCAGCAC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GGTCTCATTGGACGCACCGGCAGCATTCCAGGTTGCTGACTCTTTCAGCAGAGCCGGGCCTACGCTTTTG
Seq A exon
NA
Seq C2 exon
CACGGAAAGGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACCGAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013162-3-1,3-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATTCCAGGTTGCTGACT
R:
TGTTGGTGGGATTCATTGCGA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development