BtaALTA0014761-1/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16384261-16384968:+
Coord C1 exon
chr7:16384261-16384428
Coord A exon
NA
Coord C2 exon
chr7:16384846-16384968
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGAGAACGTAAAACAGCAGGGG
3' ss Score
-4.14
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCCACGGGTGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCCGCTGAGGAGACAGAGGCAAAGCCTGCCGTGGTGGCCCCTCCACCTGTGGTGGAAACCGTCTCGACGCCCAGTGCTGCCTTCCCCTCTGATCCCACCACCGAG
Seq A exon
NA
Seq C2 exon
GGGCCGATCCTGACCAAGCATGGCAAGAACCCTGTTATGGAACTTAACGAGAAGAGGCGTGGCCTCAAGTACGAACTCATCTCAGAGACAGGGGGCAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-13-18,13-17,13-16,13-15-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=76.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTCTGATCCCACCAC
R:
GAGTTCGTACTTGAGGCCACG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development