BtaALTA0015493-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34112078-34131846:+
Coord C1 exon
chr2:34112078-34112277
Coord A exon
NA
Coord C2 exon
chr2:34131603-34131846
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTTCTTCAGGTCCTAAAGGGT
3' ss Score
-0.38
Exon sequences
Seq C1 exon
CATTAATGTATGCAAGCATTTTTGGGAATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTTCGAGTAAAAGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAAGAATATTTCCAGCACGCATGGACTTACACCAATGGCATTGACATGAACATG
Seq A exon
NA
Seq C2 exon
GGTTTCCCAGAATGTTTACAAGCTGACATTTGTCTACATCTCAACCAGACTTTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAGACCACCCATGCACCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTCCTCACTGCGCTTTATTTCTTATCCAGAGGCTCCATTGAAATCCTCAAAGATGACATTGTGGTAGCTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCACGCATGGACTTAC
R:
TGCAGCAAAGTCTGGTTGAGA
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development