BtaALTA0015762-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34313872-34315552:-
Coord C1 exon
chr3:34315387-34315552
Coord A exon
chr3:34314268-34314300
Coord C2 exon
chr3:34313872-34314267
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCAAACTTGCCCATGTGCAGCAG
3' ss Score
3.68
Exon sequences
Seq C1 exon
GCTAGAGTACAAGTACTCCAAGCTGGTGATGAATGCTACCCTCAAGGACTGTGACCTACCAGCCGCTGACAGCTGTGCCATCATGGAAGGCGAGGACGTGGAGGATGACCTCATCTTTACCAGCAAAAAGTCACTCTTTGGGAAGATCAAATCATTTACCTCCAAG
Seq A exon
CAGCCAGCTCCTGTCACCATCTCTCTTTCAGAG
Seq C2 exon
GACTCCTGATGGGTTTGACTCGGTGCCACTGAAGACATCCTCAGGAGGCCCAGACATGGACCTGTGAGGGACACTGCCCTGCCTCACCTGCCTCCTTACCTGGACACATTACCTTGCAAGCCTGTGGCAATGTGGGTGCCACCTTCCTGCAACACCCACTGCTGGAAATCTCTTCGTTGTGGCCTTATCAGAAGAAGTTTGAATTCCAGATCTTTGTTTTTTTATAGAGTACCCAAACCTTCCTTTCTGCTTGCCTCAAACCTGCCAAATATACCCATACTTTGTTTATATATTACTCCCTTGCTTGCATCTTGTTTCCCAAAATGGACCAGCCCTCAGAGCCATAGCTTCATCTGCTCATATTTCTTATTGCTCTGGAACAAAAGTATTTCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-25-31,25-30,25-29,25-28-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGTGCCATCATGGAAG
R:
CACCGAGTCAAACCCATCAGG
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development