BtaALTA0015950-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018125 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:47343554-47345043:-
Coord C1 exon
chr2:47344967-47345043
Coord A exon
chr2:47343661-47343663
Coord C2 exon
chr2:47343554-47343660
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTCCCTGGCCTGGGTTGCAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
AAAAAATGCATGAAGTCAGCTTCCAGGATAAGGAAAAGGAGCATCTGACCCGGCTGCAGGATGCTGAGGAAATGAAG
Seq A exon
AAG
Seq C2 exon
GCTCTGGAGCAGCAGATGGAGAGTCACCGGGAAGCTCATCAGAAGCAGCTGTCCAGACTCCGGGATGAAATTGAGGAGAAGCAGAAAATCATCGATGAGATTCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018125-25-23,25-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGAGCATCTGACCCGG
R:
CTGCTTCTGATGAGCTTCCCG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development