BtaALTA0016086-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014147 | KLKBL4
Description
Bos taurus protease, serine, 54 (PRSS54), mRNA. [Source:RefSeq mRNA;Acc:NM_001099044]
Coordinates
chr18:26214111-26215285:-
Coord C1 exon
chr18:26215122-26215285
Coord A exon
NA
Coord C2 exon
chr18:26214111-26214345
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CACTTTTTGCTTTTCAGCAGCAT
3' ss Score
5.75
Exon sequences
Seq C1 exon
ACAATGGAATATTCTTCCCAAGGTGCTAGAAGGAATCCCTCGGTTGAGCTCTGCGGTAATAAGGTCAGAGTGAGTTCACTTCTCCTTTTGCAGGAGCAGTTCACAGAAGAACTCTGAGAACCATCCTGACAGCAAGAAACATCTGGCATCATGAGTGGAACATG
Seq A exon
NA
Seq C2 exon
CATCCTATGGCTACAGAGTTAAGGCAAGGGTTGAATTCAACGAGTCAAAAAATAACCTTTTTCTGAGACCTGACGCCATGGGGAAACCTGGGGACCCTGGCTGGGTTGTGCAGAAAACCAACCAGCGTGGCTGCCTCCTCTCCTTGCATCTTACGAGCCACTGGCTGAACATCGGGGCCGGGCAGCTGGTCCTGGCCTCTTTACTGCTCGGAACCAAAGAACAGGGACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014147-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGCAGTTCACAGAAGA
R:
CCCTTGCCTTAACTCTGTAGCC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development