BtaALTA0016090-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000037534 | KLRF1
Description
Bos taurus killer cell lectin-like receptor subfamily F, member 1 (KLRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099120]
Coordinates
chr5:100678541-100681018:-
Coord C1 exon
chr5:100680841-100681018
Coord A exon
chr5:100678640-100678680
Coord C2 exon
chr5:100678541-100678639
Length
41 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CAATTGCCATCACTTCACAGGAA
3' ss Score
6.94
Exon sequences
Seq C1 exon
TCTGATTAGCAGTGGGTTTATTATTCTTCTCTTATTGCATATTTAAAAAAACAAAACATAAAATTTTACATACACATCCACCCACATTTGAAGATGCAAGATGAAGAAATATACATGACCTTGAACACACAGTTGAAGAAAAGGAGTTCTATCCAAACATTTCAATTTAAATGTCAAG
Seq A exon
GAATGCACTTTCCAAGCTAATTTATGTGATTAATCTGTTAG
Seq C2 exon
ACTGTTCTGTGATGTCACACCGATATAAAATCTTATTGGGGATATCTGGAGGACTAAATGGCATTCTGGTTTTGACTTTGATCACCCTGAGTCTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037534-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGACCTTGAACACACAGTTGA
R:
ACCAGAATGCCATTTAGTCCTCC
Band lengths:
136-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development