BtaALTA0016671-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018578 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
chr11:10071901-10073875:+
Coord C1 exon
chr11:10071901-10071957
Coord A exon
NA
Coord C2 exon
chr11:10073551-10073875
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTCTCTCTGGGGCACCCAGGCC
3' ss Score
4.73
Exon sequences
Seq C1 exon
TTGATCTACAGGACCAAGACTCTTCTCCCAGCCGCTAGGGTCCCCGTTCAGCCAAAG
Seq A exon
NA
Seq C2 exon
GCCTTCCCTGCCATGGGACCTGTCAGCGTTTGGCAGTGGAGCCTGTGGGGGTTGCTGCTGTGCCTGCTGTGCAGTTCGTGCCTGGGATCTCCAACCCCATCCACGGCACCTGAGAAGAGGGCTGGGAGCCAGGGGCTGCGGTTTCGGCTGGCTGGTTTCCCCAGGAAGCCATCCGAGGGCCGTGTGGAGATACAGCGGGCTGGTGAATGGGGCACCATCTGCGATGATGACTTCACGCTGCAGGCTGCTCATGTCCTATGCCGGGAGCTGGGCTTCACAGAGGCCACAGGCTGGACCCACAGTGCCAAATATGGCCCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018578-0-3,0-2,0-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.076
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0053013=SRCR=PU(57.3=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACTCTTCTCCCAGCC
R:
CAGCAGCAACCCCCACAG
Band lengths:
105-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development