BtaALTA0016817-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46559669-46562232:+
Coord C1 exon
chr29:46559669-46559905
Coord A exon
chr29:46562097-46562126
Coord C2 exon
chr29:46562127-46562232
Length
30 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GGCTGCGTCATGCCCTCCAGCCT
3' ss Score
4.51
Exon sequences
Seq C1 exon
AGCCTCCCACGTGCTCCCCCGACCAGTTCGCCTGCGCTACTGGGGAGATTGACTGCATCCCCGGGGCCTGGCGCTGTGACGGCTTCCCCGAGTGTGACGACCAGAGCGACGAGGAGGGCTGCCCAGTGTGCTCGGCCTCACAGTTCCCCTGTGCGCGGGGCCAGTGCGTGGACCTGAGGCTGCGCTGTGATGGCGAGGCCGACTGCCAGGACCGCTCGGATGAGGCGGACTGCGACG
Seq A exon
CCTCTCTGAACGCAAGGCCCCTCCTTGCAG
Seq C2 exon
CCGTCTGCCTGCCCAACCAGTTCCGCTGTGCCAGCGGCCAGTGCGTCCTCATCAAACAGCAGTGTGATTCCTTTCCGGACTGCGTCGACGGCTCCGACGAACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-27-31,27-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=48.8),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCTGCGCTGTGATG
R:
TGTTTGATGAGGACGCACTGG
Band lengths:
122-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development