BtaALTA0016962-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98196090-98196670:+
Coord C1 exon
chr11:98196090-98196122
Coord A exon
chr11:98196435-98196510
Coord C2 exon
chr11:98196511-98196670
Length
76 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CAACTCTTAACTCTTTTAAGATT
3' ss Score
5.91
Exon sequences
Seq C1 exon
GGCACCTGAGCGGCTGGAGAACCCGGCACTGCG
Seq A exon
ATTCTGCGGTCTTCGGTCTCAGACTTCGTCATCCTGGTCTGCATGACTTTCTGAGATTCTGAATTTCGATCCCCAG
Seq C2 exon
TTCCTTCGTTTGGAGGAGACCAGACTCTGCTCAGCAGGGGATGTGCAGTGCCCAGTGGCCTGCCACCCCACGTTCATGACCAAGCCCTGCGAGTGATCGGCCTGCCTTCAGGTCCACCCGAGGGAACAACCATCAGGGACCTATTTATCTGCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAGCGGCTGGAGAA
R:
GTCCCTGATGGTTGTTCCCTC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development