BtaALTA0016971-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98224670-98225348:+
Coord C1 exon
chr11:98224670-98224768
Coord A exon
NA
Coord C2 exon
chr11:98225217-98225348
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACGGGTGTGTCTTGCAGGAA
3' ss Score
9.82
Exon sequences
Seq C1 exon
ACGGAGTTAGAAGCCCAAAGCGAAACCAAGCAGGAGAATTACTGGCTGATTCAGTATCAGCGGCTCTTGAACCAGAAACCCTTGTCCTTGAAGCTGCAG
Seq A exon
NA
Seq C2 exon
GAAGAAGGCTTGGAGCGCCCGCTGGTGGCCCTCCTGGTGGAGCTGTCGGCCGAGCACTACCTGCCTATCTTCGCCCACCACCGCCTCTCACTGGCCATGCTGAGCCGGATGGGCCCTGCGGACTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-25-34,25-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(63.8=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGTTAGAAGCCCAAAGC
R:
CATCCGGCTCAGCATGGC
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development