BtaALTA0017210-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106325616-106326378:-
Coord C1 exon
chr11:106326270-106326378
Coord A exon
chr11:106325705-106325791
Coord C2 exon
chr11:106325616-106325704
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ACGTGCCCTGCGGCCCGCAGGAG
3' ss Score
8.14
Exon sequences
Seq C1 exon
ATTGTGTTTGAAGCCACGCTGGGCGGCCAGCCGGCCCTGGGGCCCATTGCCCTGGATGACGTTGAGTATCTGGCTGGGCAGCGGTGCCAGCTGTCCACACCCAGCCAGG
Seq A exon
GAGATGGGGCGGCGGCCGCGGTGGTGCCGGCTGCGGTCGGCGGCACCCTCCTCCTGCTCGTGCTGCTGATGCTGCTCGGGGTTGCAG
Seq C2 exon
GCCGGCGCTGGCTGCAGAAGGGGGGCTGCCCCTCTTGGGGCAAGGCGGACACCGTGACCCCCGGCTTCGACAACATTCTCTTCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-29-27,29-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.1=81.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAAGCCACGCTGGG
R:
GAATGTTGTCGAAGCCGGGG
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development