BtaALTA0017472-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004637 | MARCH10
Description
membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:26655]
Coordinates
chr19:47791920-47807683:-
Coord C1 exon
chr19:47807512-47807683
Coord A exon
chr19:47792070-47792072
Coord C2 exon
chr19:47791920-47792069
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGATTTTGCACTTTTCAGCAG
3' ss Score
3.24
Exon sequences
Seq C1 exon
AGTTCTGCTGATGAGGATGCTCAAGCCGAACCAAGATTATCTGCCACAAGTTCTGCTTGTAAGACCGATTCTAGACTTCCGGCAATTGACCAAACCTCAGTCAAGCAGAAACATAAGAGTACCATGACTCCCAAGAAATTAGAGAAAGCGGGCCCCAGCAAACCCCCTCCAG
Seq A exon
CAG
Seq C2 exon
CCGAGGCACCACAGATTTTATCAAGGAAGAGGAGGCCAAACCTGGGGAGACTGACAGTCAGCCCAGAGACGCAGAGCCCACGATTGTCTGGGGACAGAAGCAGACAGAAACTGCAGCGGCCTGGGAAGGTACCTGCCCTCAGGGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004637-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAGAGAAAGCGGGCCCC
R:
GACTGTCAGTCTCCCCAGGTT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development