BtaALTA0017850-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12731574-12732396:-
Coord C1 exon
chr10:12732330-12732396
Coord A exon
NA
Coord C2 exon
chr10:12731574-12731661
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CACTAGACTCCCATTTCCAGATC
3' ss Score
6.03
Exon sequences
Seq C1 exon
CTCAGTAACAAGTCCCTTGACAGAGACACGGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
Seq A exon
NA
Seq C2 exon
ATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAAGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCTACACTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-19-22,19-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCCTACAGCTATGTG
R:
GCGGCTGAGGTGTCTAAGTTC
Band lengths:
97-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development