BtaALTA0018531-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36619547-36622747:-
Coord C1 exon
chr12:36622648-36622747
Coord A exon
chr12:36619757-36619804
Coord C2 exon
chr12:36619547-36619756
Length
48 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTTATTTTTTTCCAGTAGCAT
3' ss Score
5.35
Exon sequences
Seq C1 exon
GAGAGAGAGACCAAAAAATATGAACCCAAAGAAAAATACCAAAAAAAGCAAGATTTGGACAAGGAAGAAAAAGGCCGAAAAGAGCCCAAGGCATTAAAGA
Seq A exon
CATTTAAGGAAATTAGAAATGCGTTTGATTTGTTTAAATTAACTCCAG
Seq C2 exon
AAGAAAAAAATGATTTTCCTGAGAATAATCGGAAGAGAGATGAAATACCGCCAGACTATAAAGTCACAGAAGACCACAAAGCCAAGGAAAACAAGCCGTTACTTAAAGAAAGAAGAAATACAAGAGATGAGACTGACACGTGGGCATATATAGCTGCAGAAGGTGACCAAGAAGTTCTGGACAGCGCGATCCGAGTGGAGGAGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922-11-11,11-10,11-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGCCGAAAAGAGCCCAA
R:
AACGGCTTGTTTTCCTTGGCT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development