BtaALTA0018587-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47743376-47743827:+
Coord C1 exon
chr19:47743376-47743539
Coord A exon
chr19:47743719-47743723
Coord C2 exon
chr19:47743724-47743827
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GAGCGGCTCCTTCCCCCCAGACC
3' ss Score
8.85
Exon sequences
Seq C1 exon
CGTTCATCACAGCCAGCCTGCCCAATGTGACCTTTGACCTTTGGATTGGCCTCCATGCCTCGAAGAGGGACTTCCAGTGGGTGGAGCAGGAGCCTCTGCAGTACGCCAACTGGGCCCCTGGGGAGCCCTCTGGCCCTAGCCCTGCTCCCAGCGGCAACATACCG
Seq A exon
ACCAG
Seq C2 exon
CTGTGCCGTGGTCCTGCATAGCCCCTCAACCCACTTCACTGGCCGCTGGGATGACCGGAGCTGTGCAGAGGAGACCCATGGCTTCATCTGCCAGAAGGCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739-21-24,21-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(46.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(28.2=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGTACGCCAACTGG
R:
GAAGTGGGTTGAGGGGCTATG
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development