BtaALTA0018588-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47743719-47744556:+
Coord C1 exon
chr19:47743719-47743827
Coord A exon
chr19:47744318-47744406
Coord C2 exon
chr19:47744407-47744556
Length
89 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TCCTGCCCCCTTCCCTGTAGACC
3' ss Score
10.38
Exon sequences
Seq C1 exon
ACCAGCTGTGCCGTGGTCCTGCATAGCCCCTCAACCCACTTCACTGGCCGCTGGGATGACCGGAGCTGTGCAGAGGAGACCCATGGCTTCATCTGCCAGAAGGCCACGG
Seq A exon
ACCCCTCCCTGAGCCCATCCCCAGCAGCGTCGCCCCCTGCCCCGGGCGCTGAGCTCTCCTACCTCAACGGCACCTTCCGGCTGCTGCAG
Seq C2 exon
AAGCCGCTGCGCTGGCACGACGCCCTGTTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCGCACGTGCTTGACCCCTACACCCAGGCCTTCCTCACTCAGGCCGCCCGAGGGCTGCGCACGCCACTCTGGATTGGGCTGGCCAGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739-22-26,22-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(47.1=61.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCCCTCAACCCACTTCA
R:
GTGTAGGGGTCAAGCACGTG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development