BtaALTA0018794-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084130-51084377:+
Coord C1 exon
chr22:51084130-51084165
Coord A exon
NA
Coord C2 exon
chr22:51084262-51084377
Length
0 bp
Sequences
Splice sites
5' ss Seq
CACGTATGG
5' ss Score
4.53
3' ss Seq
CACTCTGTCCCCTAGACCAGGTG
3' ss Score
4.1
Exon sequences
Seq C1 exon
ATGATGACCAACAGCCGTCCATCCTGGAGACTGCAC
Seq A exon
NA
Seq C2 exon
GTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-14-13,14-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCAACAGCCGTCCATC
R:
GACCACACGCAGCTTGGAG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development