BtaALTA0018795-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084257-51084613:+
Coord C1 exon
chr22:51084257-51084377
Coord A exon
chr22:51084536-51084539
Coord C2 exon
chr22:51084540-51084613
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCTAACCCACATTCCTGCAGGCA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ACCAGGTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
Seq A exon
GCAG
Seq C2 exon
GGCCAGCACTTCTGCGGAGGCTCCCTAGTGAAGGAGCAGTGGGTTCTGACTGCCCGGCAGTGTTTCTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-15-15,15-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCACCCTGGACAGTCA
R:
CAGGAGGAGAAACACTGCCG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development