BtaALTA0018987-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5613102-5614685:-
Coord C1 exon
chr7:5614589-5614685
Coord A exon
NA
Coord C2 exon
chr7:5613102-5613226
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CACCCCTCCCCTTCCCAGAGGCC
3' ss Score
-0.54
Exon sequences
Seq C1 exon
AATCCACAGGAGAACGTGGTGGTCGACATCCAGATCCTAGTGGACAAGAGCCCCCTCCCGCCGGGATTCTCACCAGTCTGCGACCCCCTGGACTCGA
Seq A exon
NA
Seq C2 exon
GCCTCCGTGTCCAAGAAGAAACGCATGTGCGTGAAGCTGGTGCCCTTGGGGGCCGCGGACACAGCTGTCTTTGACATCCGACTGAGTGGGAAAACCAAGACAGTCCCTGGATACCTGCGAGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
NA
C2:
PF102404=DUF2464=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCGACATCCAGATCCT
R:
GCGTTTCTTCTTGGACACGGA
Band lengths:
104-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development