BtaALTA0019099-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53598169-53599625:-
Coord C1 exon
chr1:53599383-53599625
Coord A exon
chr1:53598346-53598348
Coord C2 exon
chr1:53598169-53598345
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
GTGCTGTTGTCTTCTCCCAGCAG
3' ss Score
7.29
Exon sequences
Seq C1 exon
GAGCGAGAGACCCTGGCAAATGTTGAAGAGCAGTGCGAGCTGCTGATTAAATCCAAGATCCAGCTGGAGGCCAGCGTCAAGGCGCTGTCTGCGCGGGTGGAGGAAGAAGAGGAGATAAATTCCAAGCTGACTGCCAGGGGGCAGAAACTTGAAGATGAATGTTCTGAGTTGAAGAAAGAAATCGATGACCTGGAAACACTATTGGCGAAGTCACAGAAGGAGAAGCATGCTACAGAGCTCAAG
Seq A exon
CAG
Seq C2 exon
GTCAAGAACCTGCTTGAGGAGGTGGAGTCTCTCAATGAGGATGTGAGCAAACTGCATCGAGCAGCCAGGGCTGCACAGGAGACCCACCAGCAGACCCTGGAGGACTTGCGCAACGAGGAGGAGAAAGTCCACACCCTAAGCAAGGCCAAGTTGACGCTGGAGCAGCGAGTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399-27-28,27-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.610
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(36.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(26.2=100),PF087025=Fib_alpha=PU(15.5=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGAAGTCACAGAAGGAGA
R:
TGCAGTTTGCTCACATCCTCA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development