BtaALTA0019218-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13163035-13164283:-
Coord C1 exon
chr19:13164180-13164283
Coord A exon
chr19:13163101-13163145
Coord C2 exon
chr19:13163035-13163100
Length
45 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTTCTGTCTCTTGCCCAAAGCCC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GGTCTCTCACCGGAACTTCATGGAGCGGTACCAGCTACTGAGAAGGCTCCGTCCTGCCATAACCCCCAGCCCCCACGGCCCGTGTCCAGATGGAGGGCGCTCAG
Seq A exon
CCCCCCGGGCCCCTGGTCGGCTTTGCTGCTGTTTCTCATCTGCAG
Seq C2 exon
CGTTTCCTCTGGCCGCCGCTGTCTCCAGAGAGGCCCTGGGCAGCTAAAGGTGGTCAGAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-33-39,33-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.9=69.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGTACCAGCTACTGAGA
R:
GCTCTGACCACCTTTAGCTGC
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development