BtaALTA0019684-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105884541-105884837:-
Coord C1 exon
chr11:105884719-105884837
Coord A exon
chr11:105884630-105884667
Coord C2 exon
chr11:105884541-105884629
Length
38 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCGGGACGCCCAGGGTGCAGACT
3' ss Score
-7.28
Exon sequences
Seq C1 exon
GAAATGTGCTGTTCTTCGGATGCCGCCGGCGGGACCAGGACTTCTACTGGGAGGCCGAGTGGGAGCAGCTGCAGGCGAGAGGCTGCCTGACTCTGGTCACGGCCTTCTCCCGGGAGCAG
Seq A exon
ACTCAGAGTGCCTCCCGCCCGCTGCCCCGCAGGAGCAG
Seq C2 exon
AAGGTGTATGTGCAGCACCGGCTCCGGGCGCTCGGGCCGCTGGTGTGGGAGCTGCTGGACGGCCGGGGCGCCCATTTCTACCTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-17-24,17-23,17-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGGTCACGGCCTTCTC
R:
CTGCCAGGTAGAAATGGGCG
Band lengths:
119-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development