BtaALTA0020177-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012152 | NONO
Description
Bos taurus non-POU domain containing, octamer-binding (NONO), mRNA. [Source:RefSeq mRNA;Acc:NM_001046554]
Coordinates
chrX:84670012-84675194:-
Coord C1 exon
chrX:84675163-84675194
Coord A exon
chrX:84670171-84670182
Coord C2 exon
chrX:84670012-84670170
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GAATATGTCTGACATTCCAGTTT
3' ss Score
3.46
Exon sequences
Seq C1 exon
CGTTACTCTGAGCAGAAAACAGTCGGTGGAGG
Seq A exon
TTTATTTTTAGG
Seq C2 exon
GTACAAAGATGCAGAGCAATAAAACTTTTAACTTGGAGAAACAAAACCACACTCCAAGGAAGCATCATCAACATCACCATCAGCAGCACCACCAGCAGCAACAGCAGCAGCCACCACCTCCACCAATGCCTGCAAATGGGCAGCAAGCCAGCAGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012152-1-6,1-5,1-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.952
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF053086=Mito_fiss_reg=FE(62.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGAAAACAGTCGGTGG
R:
ATGATGCTTCCTTGGAGTGTGG
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development