BtaALTA0020244-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105708237-105709255:-
Coord C1 exon
chr11:105709173-105709255
Coord A exon
chr11:105708318-105708345
Coord C2 exon
chr11:105708237-105708317
Length
28 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAC
5' ss Score
4.07
3' ss Seq
GGCTCCCCTACTGCCCACAGGTT
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCATTTGACCAGGCGGTGACCAAGGATGCCTGCTTGGCTGTCGGCTTCCTCCAGCGCGGAGTGGCCAACTTCCAGCTGGAGAG
Seq A exon
GTTCATGGAGGCCCTGTCCGACTTTCAG
Seq C2 exon
CGCACCCTGGCCCAGCTGAGGGACAACACCGCCATCGACTACACCCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(45.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(28.8=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGGATGCCTGCTTG
R:
GTGTAGTCGATGGCGGTGTTG
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development