BtaALTA0020882-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39257718-39258020:+
Coord C1 exon
chr19:39257718-39257810
Coord A exon
chr19:39257888-39257909
Coord C2 exon
chr19:39257910-39258020
Length
22 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCCTTCCCCTTCACCCACAGGTG
3' ss Score
12.94
Exon sequences
Seq C1 exon
GCCTCGGTGACGACGGAGAGACCCAAGAAGGGGAAGCGGACCAGCCGCATGTGGTGCACACAGAGCTTTGCCAAGGACGACACCATCGGGCGG
Seq A exon
GTGGGTCGTCTCCATGGCTCAG
Seq C2 exon
TTCCTAACCTGTCTCGCTACCTGGAGTCCCGAGACCCCTCGGGCCCCCGAGGGCTGCCGCCCCCAGACTATGCCCACCTGCAGCGCAGCTTCTGGGCCCTGGCCCAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACGGAGAGACCCAAGAA
R:
CTCCAGGTAGCGAGACAGGTT
Band lengths:
111-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development