BtaALTA0021521-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52922953-52927097:-
Coord C1 exon
chr15:52926967-52927097
Coord A exon
chr15:52923003-52923053
Coord C2 exon
chr15:52922953-52923002
Length
51 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CCACCACCCGACCCTGGCAGGTT
3' ss Score
5.8
Exon sequences
Seq C1 exon
GAGGATATGCAACAGCTGCAAAGCATGTTGGGCTGTGAGGTGCAGGCCATGCTCTGTGTCCCTGTCATCAGCCGGGCCACTGACCAGGTCGTGGCCCTGGCCTGTGCCTTCAACAAGCTCGGAGGAGACTT
Seq A exon
GTTCACAGACCAGGACGAGCACGTGATCCAGCACTGCTTCCACTACACCAG
Seq C2 exon
CACAGTGCTCACCAGCACCCTGGCCTTCCAGAAGGAGCAGAAGCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419-20-25,20-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.6=100)
A:
NA
C2:
PF0159021=GAF=PD(10.6=36.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGTTGGGCTGTGAGG
R:
TGGAAGGCCAGGGTGCTG
Band lengths:
142-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development