BtaALTA0022015-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001092 | PHOSPHO2
Description
Bos taurus phosphatase, orphan 2 (PHOSPHO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045965]
Coordinates
chr2:26664024-26665266:-
Coord C1 exon
chr2:26665233-26665266
Coord A exon
chr2:26664159-26664194
Coord C2 exon
chr2:26664024-26664158
Length
36 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTTAAATACTTTTATTTTAGAAT
3' ss Score
6.34
Exon sequences
Seq C1 exon
GTTTTCTATCAGATGATCCATCGTAATAATGCTG
Seq A exon
AATTTAAGAAGTCTTCATTCCTTTGCTCCAAACCAG
Seq C2 exon
AAGACTTTTCCCCCTGCATGTAGCGTAGGAGTAATGTTGGTTAGAAACTGGCTGGTGTTTAAAGCTGAAGATAGTCATGACTATTTAACCTAAGCTGTATGCTGAAGGAAGATTGTCTTGGAAATACTAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001092-4-2,4-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGATCCATCGTAATAATGCTG
R:
ACAGCTTAGGTTAAATAGTCATGACT
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development