BtaALTA0022184-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2020646-2021172:-
Coord C1 exon
chr16:2021093-2021172
Coord A exon
NA
Coord C2 exon
chr16:2020646-2020705
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTCCCCAACTCCCCAGGCAGGCC
3' ss Score
1.85
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCCTCCACCTTGAACTACCTCGTCCACCTGCAAGAGAGGCCAGTCAAGCAGACCATCAGCAG
Seq A exon
NA
Seq C2 exon
GCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGTTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-9-10,9-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATGACCAGAGCCCCT
R:
GTCGAACAGAAGACTCAGGGC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development