BtaALTA0022348-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99241920-99242369:+
Coord C1 exon
chr11:99241920-99241987
Coord A exon
chr11:99242095-99242305
Coord C2 exon
chr11:99242306-99242369
Length
211 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GCTCCTTGGCTTGCTCTCAGGTT
3' ss Score
7.36
Exon sequences
Seq C1 exon
CGCACCAAACGCCCCCACATGGAGCCCAGGATTCGACTCGAGCCGCCTCTGCCAGCCCCGGCTACCAG
Seq A exon
GTTCTCACTCGCTGAACCCACATTATTGAGCTCAGCCTGCCTGCCAGACCCCAGGAAACTGCAGTCCCGGGAACCCTGCCCCACCCCGGGCTCTGCAGCTCCCCACTAGAGGGGGACCACCCAGGATTGAACACAGGGGGTTTGGAGCGACTCCTGGTGGAGGCCCAGCCCTTTCTTGTTCTGGGGGCTTCCTGTATCCTCTCTCTTGCAG
Seq C2 exon
GAAACCCCCCCGGCTTCAGGACTTCCGCTGCTTGGCCGTGCTGGGCCGGGGCCACTTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-18-19,18-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.0=59.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development