BtaALTA0022386-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36467077-36470058:+
Coord C1 exon
chr2:36467077-36467161
Coord A exon
chr2:36469926-36469944
Coord C2 exon
chr2:36469945-36470058
Length
19 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATGAACTTCATCTGCTGCAGGTT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GACAGAAGAAAGGCAGTTCTGGATTGGATTTAATAAAAGAAACCCACTGAATGCTGGTTCTTGGGAATGGTCTGATGGAACTCCT
Seq A exon
GTTGTCTCTTCATTTTTAG
Seq C2 exon
ACAATTCTTATTTTGGAGAAGATGCAAGAAATTGTGCTGTTTATAAGGCAAATAAAACGTTGCTACCCTCATACTGTGGTTCCAAACGTGAATGGATATGCAAAATTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-16-20,16-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTCTTGGGAATGGTC
R:
CCACAGTATGAGGGTAGCAACG
Band lengths:
113-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development