BtaALTA0022762-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17637701-17640128:+
Coord C1 exon
chr7:17637701-17637776
Coord A exon
chr7:17639985-17639987
Coord C2 exon
chr7:17639988-17640128
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ACCATCCTTTGGGGTCTCAGCAG
3' ss Score
3.45
Exon sequences
Seq C1 exon
GTCGTGACCCGCCTCATCCACCTGCTGAGTCAGAAGATTCTGGGGAATTTGCAGCAGCTGCGAGGACCCTTCCCAG
Seq A exon
CAG
Seq C2 exon
GCTCGGGACTAGGTGTACCCCCTCACTCGGAGCTCACCAACCCCGCCAGCAACCTGTCAACAGTGGCAGTGCTGCCTGTGTGTGCCGAGGTGCCCATGGTGGCCTTCATGCTGGAGCTGCAGCACGCTCTGCAAGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-31-26,31-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCACCTGCTGAGTCAGA
R:
CGAGTGAGGGGGTACACCTAG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development